Desmond Tutorial Desmond Version 3 0 Document Version 0 6 April 2011 D E Shaw Research Notice The Desmond Tutorial and the information it contains is offered solely for educational purposes as a service to users It is subject to change without notice as is the software it describes D E Shaw Research assumes no responsibility or liability regarding the correctness or completeness of the information provided herein nor for damages or loss suffered as a result of acti
Desmond Users Guide Release 3 4 0 0 7 1 D E Shaw Research March 14 2013 CONTENTS Front matter 3 Hell N UCE Koh aeea AA ee ee Eee Rw ee Se oS ee eR ee ee 3 1 2 BGOPYRIGNE ofa A eee Pa Se Bes e eee be Pie A bo PRS 3 1 3 Wrademarks 5 zs ro Ga toe es ea Oe ee a Ee ee ee a ee a oe ee oe 3 Preface 5 21 Intended audience lt lt a sude era Shoe ae eka ad dea ee wa Seed eee dw ees 5 2 2 Prereguisites cuio a i ce a A E GS ae aE SES a Soe Re Sd 5 2 3 Format conven
Istvan Kolossvary D E Shaw Research 71 Desmond 2 2 Tutorial Workshop Desmond DEShawResearch com Introducing Desmond Molecular dynamics simulation system Integrated with Maestro modeling environment compatible with VMD visualization amp analysis tools Long scale simulations of small molecules proteins nucleic acids and membrane systems Study interactions of complex molecular assemblies Advanced simulation techniques FEP simulate