MrBayes version 3 2 Manual Fredrik Ronquist John Huelsenbeck and Maxim Teslenko July 27 2011 1 Introduction MrBayes 3 is a program for the Bayesian inference of phylogeny The program has a command line interface and should run on a variety of computer platforms including clusters of Macintosh and UNIX computers Note that the computer should be reasonably fast and should have a lot of RAM memory depending on the size of the data matrix the program may require hundreds of
MrBayes 3 1 Manual Draft 5 26 2005 Fredrik Ronquist John P Huelsenbeck and Paul van der Mark q School of Computational Science Florida State University Tallahassee FL 32306 4120 U S A Division of Biological Sciences University of California at San Diego La Jolla CA 92093 USA ronquist csit fsu edu johnh gbiomail ucsd edu gt paulvdm esit fsu edu MrBayes 3 1 Manual 5 26 2005 2 Contents Vnirar iR 2 DIC hO Mae HOM ec 4
MrBayes version 3 2 Tutorial Fredrik Ronquist August 12 2010 Contents 1 Introduction 1 1 Conventions Used in this Manual soe wb gt we ale BAS 1 2 Acquiring and Installing MrBayes 3 Getting Started 2 0 ot Deni eat ate Baie ge PE Es ag 8 Oe OR Bee 1 4 Changing the Size of the MrBayes Window 15 Gettines Help 2 2 0 of gece bo ge eee a aT GR eo ee RAS 1 6 Reporting and Fixing Bugs 4 4 4 2p aed 2S ae A 1 7 License and Warran