hapQTL User Manual Yongtao Guan Baylor College of Medicine ytguan gmail com Version 0 99 7 July 2014 Revised on 25 June 2015 Contents 1 Copyright 2 What hapQTL does 3 Example 4 Input File Formats All Genotype file format ess ll da A deat a BOS la Bees Oe Gp Ra 42 SNP position file format pa cc 2 4b a ance a Ed ea ee a Phenotype les xs berets Mess tds Bee Ge A Se ne te A Pe oe at ee AA Covariates Tle o A ama eh ee hy ees Se Ret 4 5 Individual filter fil
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